Scaffold Ga0209810_1025433

Overview

Basic Information

• Taxon OID: 3300027773
• Scaffold ID: Ga0209810_1025433
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3685
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007233	Metagenome / Metatranscriptome	355	Y
F017625	Metagenome / Metatranscriptome	239	Y
F090756	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209810_102543311	F017625	N/A	MSKNKPQEFNEEEFFGFAKSYLSEAFPNPQRIDCPPDSDLQRMAEHPVSERDDEVSKHLIGCSPCFKRYMEILAELKRRKAG
Ga0209810_10254332	F007233	GGAG	MATRNQKRHRRKSNQDIFTDGIKGKVLKAVSISNELECRYISLEFEDKTELRISLDTRLTGKLELFDGKTGDQELVRRVGLIPDDTPLWRPAERWR
Ga0209810_10254333	F090756	GGAG	VAGKRKPKYLSAHQGCPGGPKCRHCTWDGMYISVDGPHSKYMKGRRGQYRGDIDGAIDDFLTTLKRDARYLLRECAKITPVLSQFHLDFS
Ga0209810_10254337	F017625	GGAGG	LPKARKVAFNEEQFFGFAKSYLSEAFPNPSRIDCPPDSDLQRMAEHPISERDDQSSKHLTRCSPCFNRYMEILAELKSRKAG