Scaffold Ga0209810_1001803

Overview

Basic Information

• Taxon OID: 3300027773
• Scaffold ID: Ga0209810_1001803
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29538
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (91.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007854	Metagenome / Metatranscriptome	343	Y
F012361	Metagenome / Metatranscriptome	281	Y
F013999	Metagenome / Metatranscriptome	266	Y
F016649	Metagenome / Metatranscriptome	245	Y
F036795	Metagenome	169	Y
F085449	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209810_100180310	F007854	GGAG	MNTLIANQYGRVQGEAGGCGLTLCVTVQTPRRESVELQTRVDSIEQQLHFLAILRAVERRIEQFQLRDGKAGESTDQQSPFDETVCGEEDLFRSNGSPSKNKIYGRFSQFLVYEQVDQGRLRVFFAVRDEAKRVARFDLHPGEVQAMHSLARRALFSCEQIGLLLRDELSVSVTLSASRHGLRFGVQTPLWRSEFVISKANDLATLAVFTRRAINQEKTIPIKFGGEANQLTLRRRNDGQVLAEFEHDGAMERIALSTLQLYELEILAQYALHRAFEPSSFAAGNPLPPETATAA
Ga0209810_100180314	F036795	GGAGG	MKFVWIGALLLIFASVANLISNRQSGRLIEESWTPASHVLPETRLRELKRSTPAYAAQIFARLPEPIREKFAAKIRRALELMIFRSLLLWHITPALLIAVIAGSLEGRWARANQKALVKMHSPMRFSLALTGLGFMPIQALLWITAPVAVPPTLLVFTVGAVVVISTRNLVVHAPTRF
Ga0209810_10018032	F012361	AGGAGG	MSNDGNSFTHYVIANEAILGEACVIEKCNAWISLAFIKLGIGRPDAVADRAFVENRALVPKTAN
Ga0209810_100180324	F013999	AGGAGG	MFGTIRRKWRIESRRFVRAVGTGAATLLLASPAFAQIGGDRVSSFLSNALSYAQGLGIFGAGFLVIWAVANIARERPSGKQWAGAGGALLLSSVLQLLRTFAG
Ga0209810_100180332	F085449	GGA	MASGAAPSSFRLNSVDRHGRQIDPAVLAAAETVFARALEYGTNLLGDTAVVTNALEEIAATVSQLIARRDPPGAPEPIRNLPGYIFRAFVREVNRLKNKELAVLDAAIAGHTLAQRLADPARQLEMRLLVDECLAEFNFVERDMCWRRLEGFTWDEIGPVHGLSGHAAEVRFRNAVRAVKAKLARSRKPLPPGAQTAQNEQLMPAMEADDDKRKT
Ga0209810_100180333	F016649	GGGGG	MCNRPLSFFLIALAFAIFSLSGCVSRQDISGAWKGTIQASAAGGKGNWQGPAELTLNQNGDALTGTLVFTHPQAGRVQVPITSGVVSKNAVTFSGQSQFPLGGSIEVTFHGTVSGTSLSGTTDMTSRGLFGTVTNSGPLNLAKQ