NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209810_1000595

Scaffold Ga0209810_1000595


Overview

Basic Information
Taxon OID3300027773 Open in IMG/M
Scaffold IDGa0209810_1000595 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)75567
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)67 (79.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003700Metagenome / Metatranscriptome473Y
F005369Metagenome / Metatranscriptome403Y
F006436Metagenome / Metatranscriptome373Y
F074515Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0209810_100059513F003700AGGAGMLLKILVAGALLIGVMAAIRDGRVLRDAGLLSACNAVLVNGKPDPTVLSCSKGRLDGFPDMTNKSCSLIAVHPNREYWRCQAPVVSSQTPNG
Ga0209810_100059514F074515GGCGGMLYAAGICLAAFVGAIAIMAGRSEEVLDVRAQAEADAGLEPEVEPEVMGDAAPLPPRWRRKSRVIAELQIELSTTRGELEEHRRALATLATRLSRESEAAQQNAARLERQIRELEAERDGLQDLVARERERFEQTLEELGGGIGRHGNELAELERVLEALIAR
Ga0209810_100059517F006436AGGAGGMSSTIEEGLNRRQSLLEVEYDVTRRDAERSELAREIAAQHERLHTLRAAVLEELTRQRRVALPRWPSGPKLAATLVDEDEWWNKMLGRKRAA
Ga0209810_100059582F005369GGAMPLRDEIAELLRMPEDGVGAPSLDAIESTLTDGYAEALALEAERSRIERRLGEVARDAGDEADVREFARLSESLETADGELARLRSLLRNLQARRRAARALRSGASS
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