Scaffold Ga0209810

Basic Information
Taxon OID	3300027773 Open in IMG/M
Scaffold ID	Ga0209810_1000031 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209810_1000031 Open in IMG/M

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	468321
Total Scaffold Genes	508 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	312 (61.42%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

468321

Total Scaffold Genes

508 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

312 (61.42%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003958	Metagenome / Metatranscriptome	460	Y
F004571	Metagenome / Metatranscriptome	433	Y
F005370	Metagenome / Metatranscriptome	403	Y
F005423	Metagenome / Metatranscriptome	401	Y
F008455	Metagenome / Metatranscriptome	333	Y
F026262	Metagenome / Metatranscriptome	198	Y
F030611	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209810_1000031151	F005370	GGAG	MINRLSWDTTAPRKPTKRRPREEPVDMGLLEAEAELIRVAWDKRRRLMSY
Ga0209810_1000031191	F004571	AGGAGG	MDTMRLPRPRHGDPVDTTAELRQLAAAVLEDDVQTLARTTAYLRRSYRAVFLGYVAMLVFGLAAVVTAFVKGLTATTVGEAVAAIGLAGLTVGIFAAFFVQRPSAALERNAIFMPWVSIVLTTFWTRMLYLDDPATLDEKLGRAAKDASEELAAIAQRYASIDRSELAVAKEAARTRPAKPT
Ga0209810_1000031304	F026262	N/A	MVECLNCGKRRETPEHECPRCAYLGWAYVEELNDALRRRLRERTLVDRRLRLAG
Ga0209810_1000031430	F008455	N/A	MTIGQRLIAEEHHLQEIASEGYQPAALVIVLAAILLGLGVIVGLALGVTLAVYYWV
Ga0209810_10000316	F003958	N/A	VSNRIGAGFVVLQMDYEPTMAFVVERQEPPGIEVRVNFGVFAGRAATPAEIDRLAEWLLDEVGEVSIIAEERHEIDAHVEAAVHLVRIEVAPDRVPAEPEQRRELEQRIRDRAEHWARLCVAERHADVADAF
Ga0209810_100003178	F005423	GGA	VTAAEKVRDFFRLVAPGFVIDGELPSVQLEGVEVRQDGHAIAMVQADGRTLPIRFTFDEGKIARVEVL
Ga0209810_100003199	F030611	AGAAGG	MDHALKTPDPHEPTPLWCACEKPLPVHIAERKGAARSVCARCERPLRLTLRLA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209810_1000031

Overview

Ecosystem & Geography

Associated Families

Sequences