Scaffold Ga0209768_10077321

Overview

Basic Information

• Taxon OID: 3300027772
• Scaffold ID: Ga0209768_10077321
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1682
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012016	Metagenome	284	Y
F046899	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209768_100773211	F046899	AGGAG	VQTTKLNNFDPHTRVSIQVFEDWQMKIFKKNAKKGWRFFQPDQFDKPTPRSAREAWGAPYKPDTFEKNEDRNSKIMVAVVAVALLVL
Ga0209768_100773216	F012016	AGGAGG	MQETYKQPYAWSIEEFNINGELVWSSITQFRPKELSWIRDLPTKKHYITITPLYKCEDKAEKITGVKSYRESTQRLTDAYSGL