NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209279_10082957

Scaffold Ga0209279_10082957


Overview

Basic Information
Taxon OID3300027771 Open in IMG/M
Scaffold IDGa0209279_10082957 Open in IMG/M
Source Dataset NameMarine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)911
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location
Location NameAtlantic Ocean: West Antarctic Peninsula
CoordinatesLat. (o)-64.8156Long. (o)-64.0406Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008385Metagenome334Y
F026409Metagenome198Y
F028621Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0209279_100829571F008385N/ANIYGDYKVCIKCSDPADVIEGTKNYCVECWYKHVNGKSFKEVDKQIKEEERFIKKKXNT
Ga0209279_100829572F026409N/AMKYLIIFILLSSCSFSDYDFNPSTTILKQLLKGAKNDKS
Ga0209279_100829573F028621AGGAGMIKVKLEPFEVQLAFENSTKRYIENLKQGKGFSYGYTGGFEKQITDGVLGSLGEVAFAKGLNRYFNSSYSDSYARYSDSDMQDSIEIRSQKKKDNNFLLIRPNEKKAKYVLVIHNGDFEFSIMGWFPYKEDNEEMSKRLTDFGYSNRPAAYKVNINELNNMEDLXVIK

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