Scaffold Ga0209279_10054249

Overview

Basic Information

• Taxon OID: 3300027771
• Scaffold ID: Ga0209279_10054249
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1137
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013135	Metagenome	274	Y
F031664	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209279_100542491	F013135	AGAAGG	MADVQLSEEAIEFEKQFEESTKKVEPVNSGLITNPDENDFNFWNTAGSLTLSAGQGVVNAVEEQGDFLDENIVSLGGLEFGDEDGKFTFKDLIPKYVSPKKWKEGGYSQQRNLPVFHKPEGIGENLTEGAARFVTGFIGPSKILKGVGLGGNIIKTGLR
Ga0209279_100542492	F031664	N/A	VKGDPNADYEEAERLLNELENFERYNGSKTISGEREAKFATLKQNILTESISNDSFVRKIEQGNKFFEYQTEQQKLLESNFFNSMIPTLNKAINKERAVEASLEYGERIDLYVQSNLDASYNEQQQYARQLRIDLYDKYQDVKTEQITGFNLEENKFNVIRETSVIVEAKKNYIADPKAKNILITMSRLNGYVDENGKPQPIKFYNDYIKILKSRQEG