Scaffold Ga0209279_10035472

Overview

Basic Information

• Taxon OID: 3300027771
• Scaffold ID: Ga0209279_10035472
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1448
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021188	Metagenome	220	N
F046006	Metagenome	152	N
F053545	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209279_100354721	F053545	N/A	EEIITHMGMKVSTHSGYVMLPIEHTRKNIEGGRESKIKWSGETLPEVGKE
Ga0209279_100354723	F046006	GGAGG	VDEYLVPLGKYINTALLLIVWYFCLALLVVNFRYIGKLNHTIDTMWHEIEQVKDTNILLYQFIEEHENDFE
Ga0209279_100354725	F021188	GGAG	MEDTEELEIIWIPEEEAKYNLTIENDKGVSELVDLPASTIDRICKKKFGHTNWARMGAIFPEELTRNPHELDYLEGIVYFKHPRLV