Scaffold Ga0209279_10013890

Overview

Basic Information

• Taxon OID: 3300027771
• Scaffold ID: Ga0209279_10013890
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2635
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209279_100138903	F014794	N/A	MAIASIDNLAPTKSLIDLTQKDKGDFGLEDYDLNFIFDDILLVEYVDETDEGDEVIRNGIIVPTNALTKAWRKGKIILAGPETKYAKEGDIVIFPNNMGVSISNINVTGKGKVKKGIFLNEERMFGICKRRNDSTTRGT
Ga0209279_100138904	F018622	N/A	LEFAREEMIVQRGALDSLLLKNVCDIRFARRTVKLGQAPTRRMLCTKSLALLNSVNGRISLNYFPPKSPPHSYLTPDNLAVAWDIIMQDYRNINMNQCDLISQIPANEEFWIYFNESIYPMSGDQKLNFMNS
Ga0209279_100138905	F018815	N/A	MNISLEKVTDFLKPFLLRDIVIKTNKKVLKRGKLKIFQVKQYYINLTLDYNGSIKSYEIPYPFGVYNYDNGAILNYQLSSFIPIHQMNKVKFLDSSSKSKLYDNLVYMLTSVDF