Scaffold Ga0209279_10005704

Overview

Basic Information

• Taxon OID: 3300027771
• Scaffold ID: Ga0209279_10005704
• Source Dataset Name: Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4982
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From The West Antarctic Peninsula, For Metatranscriptomic Analysis

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: West Antarctic Peninsula
• Coordinates
  • Lat. (^o): -64.8156
  • Long. (^o): -64.0406

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024646	Metagenome / Metatranscriptome	205	Y
F046002	Metagenome	152	Y
F094401	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209279_100057041	F094401	N/A	FLSSRTNLTIFQCLLYFVVGYIMGEYLTWPELGLMFVIMFLIQFITRTKAVADGMVFRQIMTDIDCDANELAERMRDEVDKLLKDKDKNDYN
Ga0209279_1000570410	F024646	AGGAG	MTEHQLDQIHNYTKFKVVETLIKKHTEGNTLSDLDEIEEVAEDVLTILGLVGAKYYGKGK
Ga0209279_1000570411	F046002	AGGAG	MVKEKDKIFLFKWFSSLFTVWYASIGLYLYDPYILQIIYWPLHTHDIEIDVMESTVDWQYYIDKLDRDLETGFPNIYETDDSEEIIIEPVIEEPDSLMIKLGRYINE