Scaffold Ga0209086_10056895

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10056895
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2162
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012344	Metagenome / Metatranscriptome	281	Y
F015339	Metagenome	255	Y
F040107	Metagenome	162	N
F060919	Metagenome / Metatranscriptome	132	N
F085154	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_100568952	F040107	AGG	MTGIEALSLLKNGKTLRRTSWEPHEKCKALDFFGQWIVHLAREEKDEISDQQLKEIFNERFTLIDSSFDDFFGSFDTIDAGEFLHDDWVIVE
Ga0209086_100568953	F012344	GGAG	MKLSEVLDALMEGKPITRVAWEQKYMYYDKDENVFVHHYSENDEWELMSWSLDLEPRDVIADDWDIDFWDTEDNKVDEE
Ga0209086_100568954	F060919	N/A	MTGREALDKLQAGYILRREAWEPDEKCKAYFSDDLWSIRVECDSISPIPEHVPDDPIFANYMSIFDAIDAGEFLMDDWEIVE
Ga0209086_100568957	F015339	N/A	MSTDPKIYSEDYIKGRIYSFVRFKKYLCEIAYIFCEEFQYDKYDIIEVSMSDDGKTVWIHFDSGTIGFASELLWDKNVRETFRKNYEVD
Ga0209086_100568958	F085154	N/A	NIELKRDINWAVKMLESGKMMSREGNPSLTLFPKKYDHAESTITTTDLFAEDWIVVPTKTFKDVLDDLNAGKTIRRKSWHSDWGVGKYARYGKIIYLDLIADDWEVVDVVAEVNKQQEQILKDRNEH