Scaffold Ga0209086_10042482

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10042482
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2610
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032536	Metagenome / Metatranscriptome	179	Y
F048123	Metagenome / Metatranscriptome	148	Y
F062447	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_100424823	F048123	N/A	MKPRYDFDKGKMISYDGEIIEFAGSNKIDKYSDQIEEIMSLFNLKKGEYLVTDESKISDFGKDTINILRLAKFKKKYKFSVMNKDFLYKIAERMYSYRPF
Ga0209086_100424828	F032536	N/A	MSQRKTFEELMRSFRFHKNPIINWFLTEVNYYSHTYLNVKWGLKNKFQRLIRGYSDSDCWNLPQAIARFILPRIKHLRKNYNSLANRNHLITIDGKVIQYKADQKNLQLKEDSTGYVEGYIDKEINKPISLDASEYEYVLDEIIFALQMVVDEDSTDIGNLDRLYEVYPEGFDPIEDRQMFLTPQGDGTSLVEFENKDNIQPDYSKLNKAYERQRNGLILLGLYFKDLWD
Ga0209086_100424829	F062447	N/A	RFMKHKILWEKNSRIKGIVPKEQIIDKTQTHKFPCGAVTIRMSNVNDKNPTAVAYFHGKEAKGTSWNGSNYTYAENKLMVSLTKEGNGYNFNGSIIDFFSLQDLKEVLDLVRETLNKL