Scaffold Ga0209086_10034313

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10034313
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2991
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010463	Metagenome	303	N
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F033350	Metagenome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_100343131	F010463	N/A	MNHPQELVLAATIHRVKLCEDKIREFEQMVSTLTSQMAQNRTELASKGLASLVMGTTTPLDIPKELVPTYGKHRARGNRSHSIVKKRWELWKAQHDSGLSIQEIAKAWGCHHTSVLNAKNRN
Ga0209086_100343133	F023585	AGGA	MSVKRLSLLDEFHGVISGRLKVLFKRLSHAEVENFRDIINNLDYSHRITKELLKKAKEFQKRDIEAKKK
Ga0209086_100343135	F033350	AGGAG	MPIDVQIPETKWSMLVWRTTRELPRNDEKVLMDIGGEVVVGRFVDGSFVSRSWGHSESDVRLWASWPVAPKW
Ga0209086_100343136	F023833	AGGA	MKSHSELIQDILKEVTSKAALSERNRCAELVQQLADGTEDQVITGILNEVVTAIRRLPDA