Scaffold Ga0209086_10024971

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10024971
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3667
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F002387	Metagenome / Metatranscriptome	565	Y
F003603	Metagenome / Metatranscriptome	477	Y
F007468	Metagenome / Metatranscriptome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1002497112	F003603	AGGCGG	MKTKEEQIGELLANSVEDHFFNPAALGRYLADQPTYTLDRVMEVVAWIIEKQARRYDREVETGGKVSEGLAIAHKLDMVIDKIKITNDLKNIKLPITPKERAEFVKALPFESSQNYRYSWLHETNNQSNMYINQGM
Ga0209086_100249712	F002387	AGGAGG	MASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDKFIFDEFNKFYELKEGDDDYLDIL
Ga0209086_100249715	F007468	GGAGG	LTTLTKSSKFIEYMKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNENER
Ga0209086_100249716	F000263	AGG	METLYADNELPSHLQRLVDAGVNGLDIMHGELKNLMLIAEEQLAWAQAIEDETEEAMDSMARTEAEGRLDALVELYKLTYDLSFAIGARNEASR