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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027770 Open in IMG/M |
| Scaffold ID | Ga0209086_10021681 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4014 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039124 | Metagenome / Metatranscriptome | 164 | N |
| F048782 | Metagenome | 147 | N |
| F074416 | Metagenome / Metatranscriptome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209086_100216813 | F039124 | GGA | VCIVEMKTVSIIKDGSIVKSHIDYPVTNAQWKRIDNIVLWDYLKTLHLIDSNNSLVMFQGTLDIFYLRHRHKDDIITKIDVNSDPWHRQFVVMPPMVQYYSNDTLYKYYTHISYKILITVNIIVTTVNNMRVYCVDVVKDV |
| Ga0209086_100216814 | F048782 | GGAG | VTDRYPVTGLHWKLNVVGQEGNEFGLGEYMQCVMVMRPDKEIDVTKVDVSVIEHALKVKGVNRYYVRNSMSRSLFSLFGGFGVDDDVYDDVWRMYNRDPWNRRFPKFVDGSVEDMYINSSYAARVSYGFWVYYRDRVISGDISDDTNYGVRYISEVPVLILHTTTIEGVTVACLDVVNANKI |
| Ga0209086_100216817 | F074416 | N/A | MSKTIINVSNDFFDVGGKEGDLMYNFIGNNACGLTKDNVLSGKMINLSEMYENMVKDVKEFLFGGEFVSIIDKGGGMAHLVNKYTTKKYGISIESVYNKIQGNLTVTGMTTDILFNELKVKYGMTGIDWMYLYNNMKSFHTNDVEILEYMCNRLLSNDIHEYFVTEYNLRTMGVVKQVISRNRNNISVDSSIHYINVGWNNGGKKELCLSKFVTSYKQWWRVMTGNKNKNRSDIRNYDVLLNGRSVTDVFPVYCPVFSNLRMNYTGIDFDIGGMNIKKCSEIAGYSDKGETWSFASIDRIDSNKGYSYDNVRIISQYANYLKNVGNIDQLRILLRYMDEQNSYL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |