Scaffold Ga0209086_10020863

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10020863
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4111
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050153	Metagenome / Metatranscriptome	145	Y
F057381	Metagenome / Metatranscriptome	136	N
F068423	Metagenome / Metatranscriptome	124	N
F072350	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_100208631	F072350	AGGAG	MQDYYKAKFTWDYDDKRMRYDVTEWDNPVNGVRLGKVVFYSDVMEECIAMAEEYNYNYKCGQEWELFNNQE
Ga0209086_100208633	F050153	GAGG	MSKGSRARPLGVDFDKYSSNWDSIFSKSPKEIDDAVIEDEAFKLIEERNKNVISDQKPD
Ga0209086_100208634	F068423	GAGG	MDEDFDFNFPMEINYEKILTNNSILPMVRLLAADLMKNPYMSIGTFLQRARTDDLQLILEASEDEEDERLSDILLLAEMLAKAEGVETECIEDVYKHLNSFITLAAVASLERKGLILADYDVMSFGEEYAHSTIAKRKP
Ga0209086_100208636	F057381	AGGA	MMRYFFNDVEVTEAEYKELISKSTPDIPAKFVQVVPNVKVEPKTKPMPKKSVAKPASSGASKIDQAIELFKNNQGLTDAQFITLFQLKLGDISKGNASIYLKKVKERTK