Scaffold Ga0209086

Basic Information
Taxon OID	3300027770 Open in IMG/M
Scaffold ID	Ga0209086_10003995 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027770 Open in IMG/M

Scaffold ID

Ga0209086_10003995 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11030
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (70.37%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

11030

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (70.37%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F003962	Metagenome / Metatranscriptome	459	Y
F011649	Metagenome	288	Y
F019450	Metagenome / Metatranscriptome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000399512	F002826	N/A	MLVETKARLKWSRDILLTAREKLVLEKNRADRGRSVDIIQIITMVDAAALIAKEILEEIK
Ga0209086_1000399516	F003962	N/A	VAYDEGQEGHVLSQDRDELKMAHKFISLLQLENAKLHGVVRLLGGLVDDMEANCSYEVFEAQWEGLTTYVKGLSEFFSTHQKALQSLQEACPAVWDQDEVDET
Ga0209086_1000399523	F019450	AGGAGG	MESTKHSFAVYNSRGQFFARFTSYARALRWAVRNGMEWSAEIKKERDTQTK
Ga0209086_1000399527	F011649	AGG	MEESLVEKGKNGRDIFTKELADEIVAACGSGFTLEKAGALVGVNPSTIRTWAQRKPDFGKRVETARKKHELSLLRDVQLAGEKSWQAKAWILERGYNWAQPSARLAVTQDVTHGISSNLASLLAGIAVKKKAQVIDLQDVKAKPKLNSLYNSNCATSGTQDAVTTTQLKICKPRKVAMRRRKPRQESLAKYTTTPPATPPAPA
Ga0209086_100039953	F003304	AGGA	MRKALVTQAFGDEWKKILELTKPRMEAYCKRHKIDFIALEKPLVDPVQYTKSAIGNIMATKGYDQVTFLDADVLVATDCPDIGEDAGVFCAFDEGAFLDRKLAMGKLAGAFGAIIDPRFYVNTGVFVISSKAVGALSMPPLGLLPNHFAEQTWMNIMVHIWNIPLTELDPVYNCMTSVEEHFGLDRYTDAMCIHYAGQSVDLVKLAELIKADDAKLVELGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209086_10003995

Overview

Ecosystem & Geography

Associated Families

Sequences