Scaffold Ga0209086_10003000

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10003000
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12974
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003112	Metagenome / Metatranscriptome	506	N
F004760	Metagenome / Metatranscriptome	424	N
F047565	Metagenome / Metatranscriptome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000300015	F004760	AGGA	MPIYEYEDTRNGKVVELEKTVAERDKVPRYLKRFTVPRKLTLVGVGEPLDNPLGVNETNLMKGYYRQEQKLGSGFKSKYTPDSIKRATLRRK
Ga0209086_100030006	F047565	GAG	MEERQMTLYSMIERSLAFHGDVANRLGALETLKTKVLAVAGVVGLACSMGWDVLKNRFNG
Ga0209086_100030007	F003112	GAG	MTRAEYICFKEAMKFAVENNNMVKETKYVGKVKHLLSVNRSIKRIVDDGRDRDEVTDAVVHLAVALRYLEGRGRES