Scaffold Ga0209086_10002493

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10002493
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14373
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F008130	Metagenome	338	N
F027510	Metagenome	194	N
F044491	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000249313	F027510	AGGA	MTINNLPKFVILLVGLLCLTALMITNKIDMASGVPMLTMIIGYSIGNGVNAKQGGESSNVFSNKRKQ
Ga0209086_1000249315	F008130	GGAG	MADAKTYVYEVYTTHLDSEQMVLVQIFRDPETDKVLHAQIAFKSAVGDSWGTPYQLEKK
Ga0209086_1000249317	F000722	N/A	LAGQHGTYQVSEIPYPEPGMSQETREAMYPDTYSDKLGKVFTNMIDEIVRPNHVPSKAPDYSILLDELELLHEAHITVGGQQNRFNAAVIRSAINVIRAL
Ga0209086_100024934	F044491	N/A	MTTYNTATKQLISNYACISTLEPTDIAVGQSITVASIGSPFNGTFTVLALPQYAFIGVDSNSGEFEYDVEVPRPNQIIYAATGSNVDYVVTYAGTVTYTQSCTWITTAALITYLGVTITNPSDDYTLAEQARNAGNDFAYRRRQESGYFDSLTTSPGHDATLGTLMYAAALWRSRGSIETAYAAFDTMGTPTQQSLTPIVKQLLGIPRPAVA