Scaffold Ga0209086_10002141

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10002141
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15613
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044453	Metagenome / Metatranscriptome	154	Y
F078204	Metagenome	116	N
F078205	Metagenome / Metatranscriptome	116	Y
F105052	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_100021411	F105052	AGGAG	MSHLDEKQALIDIIKGEEKIYSQMVYTMGFQRLVKATSKEEAISKFQNDHIDVIADDENVDCDDHSEVVETDL
Ga0209086_1000214111	F078205	N/A	MDLISIVSGILSWLQVSTGQATITAGTIYQGAVVIDKVTTEDFRGTWTAELQEQGIQTIKGFIIKVENTND
Ga0209086_1000214119	F078204	GAG	MLPPQFGRRKHRGYYRDQFETDEGETTLLLGILLALWGVYWLVVHWIDWAVGNLMVWWVEPLTLFITLPIMGFFAMIIDKYGSNPIYWWPMFWGTKVVIARDVEFYVGFDDEEFVQNNGGRANVYCGTDSNEDLYIKFRTRKDAVIYSLRNL
Ga0209086_100021416	F044453	AGAAGG	MEIKFLVKDEDGEFLTRQQVIDRLCQYDVYLLMKNIDQQDYSWLSDTREHGFKGYANYSDDELKEEWSESEDGWRGMIADEEQPYEIVSTAGV