Scaffold Ga0209086_10001325

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10001325
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20187
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (75.61%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F002009	Metagenome / Metatranscriptome	604	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F003962	Metagenome / Metatranscriptome	459	Y
F007467	Metagenome / Metatranscriptome	350	Y
F011649	Metagenome	288	Y
F036596	Metagenome / Metatranscriptome	169	Y
F037622	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_100013251	F007467	N/A	KPVTDKEAWAKFEDGLKDVTSMEEALAWVKKNQAIVEKLSIRAMIRNFNDDISRANKSWR
Ga0209086_1000132516	F002826	N/A	MLVETKARLKWSRDILLTAREKLVVEKNRADRGRSVDIIQIITMVDAVALIAKEILEEIK
Ga0209086_1000132525	F003962	GGA	MAHKFISLLQLENAKLHGVVRLLGGLVDDMEANCSYEVFEAQWEGLTSYVKGLSEFFCTHQKALQSLQEACPAVWDQDEVDET
Ga0209086_1000132526	F037622	AGG	MDKEQIIREYFASIGRKGGSVTGITKARKMSREHYQMVAQTQRERWQKWRVENGRPEAKRKRSRIKDV
Ga0209086_1000132532	F036596	N/A	MNKTKTWKIGEECIGGIIQIKVSEGTYFPQGTTIKVLVKEWKSGAVIHSNIFGRIHESRLLNHLHDMTTSYHAETIMEWIKENAWQHSVLVTMEGRN
Ga0209086_1000132534	F011649	AGG	MEESIVEKGKNGRDIFTKELADEIVAACGSGFTIEKAGALVGVNANTIKTWASRKPDFARRVETARKKHELSLLRDIELAGEKSWQAKAWMAERIYNHAQPSARLSVTQDVTHGISSNLASLLAGIAVKKKAQVIDLQDVKDKPKINSLYNSNCATSGTQDVVTTTQLKICKPRKVAMKRRKPRAESLAKYTTTPPATPPAPA
Ga0209086_1000132540	F001459	AGGGGG	MGYKAMRKLKAALAFIRDQAWINEPKWEDEDEKAWTGFLSTPTGKKLSLILLNLTLRQNASAVMKKHDVLADACGYAKGFRGCVATLESLASQKLNSAVPGYGDGSDEPVAD
Ga0209086_100013255	F002009	N/A	MTHPTIAEMGDEAAAVVWRIMGKGSDKSAYGDWLLKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRCLFTLAQIKKEVTRL
Ga0209086_100013258	F003304	GGA	MRKALVTQAFGDDWKKILELTQPRMEAYCKRHQIDFISLEKPLAEPVQYSKSAIGNIMATKGYEQVTFLDADVLVAADCPDIGEDAGVFCAFDEGAFLDRKLAMGKLAGTFGAIIDPRFYVNTGVFVISSKVVGALSMPPLGLLPNHFAEQTWMNIMVHIWNIPLTELDPVYNCMTSVEEHFGLDRYKDAMCIHYAGQSADLVKLAELIKADDAKLVELGR