Scaffold Ga0209086_10000643

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10000643
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29890
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (42.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004206	Metagenome / Metatranscriptome	448	Y
F007030	Metagenome / Metatranscriptome	359	Y
F010533	Metagenome / Metatranscriptome	302	Y
F051085	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000064310	F010533	AGG	MRTVTYDYVLQRACELTGRVFSSLTTEESNLFRTFISMSLRSAWECFNWPEQTVYQQEFFAANYSSAQVYSGGMVVYYPTEQKYYQYVGAINSNNPPTLNGPGGTLNSQYWGLAQPSYGSTATWDTTTVYNIGDIVLYPEDQEYYQLFATASAGTVPTNAVYWGRLNKFLRYINQQLNPSGTTRAVEIGETFSVWPADPRITWRQHEPAYTLTDYGILIGEQLPYVWIEFRKSPPLLSTAGEATAYAFPYRFCEVCSLKAAGQMLRVDGKIDLGNTFLELGEVELTKEIDKVALQEKYVRQIIVPGR
Ga0209086_1000064324	F007030	N/A	MNNPATATNMNDPFIYAPQPTTVVNEPTTSGTRPSIHVSLYAYGGISAACLMSWVGLTATFSTSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWIQIDHDIEFDPKDIIRMAELAHEHQATVCIPYPCRALPLRPALRIDTEHVKALRMQTSDAECATELVPIRMFASGCLAIPRRCLMSALDWLGGSEVPNPYRIDWCKDVRVDQFPTLWMPFAMDSRPGEYEYLSEDYAAAVRLSLCDVKHYAMQPKKHLNHWGEYPYGFKPYVG
Ga0209086_100006435	F051085	AGCAG	MNYGYQGSMPYGQGGGMSQFAPQMPAMQPGTGYGAPMQQMNPMNTVADVEEQRKRLKALGLDDSFIDDAFAMKQGMLEKRDEMKGQALDAIGSGLKSAGSGIASAASSAGSGLAGLASSL
Ga0209086_100006437	F004206	GAG	LIPLVTDYLLHKLPDSFKGWTREAVEDYVMFHAQQNTLKVALQDGHVVAVLVGWRQMGPEPQAWTWQKSDPNGDHWYWHQFAADCALFAMAAAAKFFHDRPESAILPAIGYRNGKLTTYKKGSMPIYRVADKKYGNLS