Scaffold Ga0209086_10000506

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10000506
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34010
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (91.84%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050338	Metagenome / Metatranscriptome	145	N
F063657	Metagenome / Metatranscriptome	129	N
F066734	Metagenome	126	Y
F078664	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_100005061	F066734	GGAG	MRTRDLVQDALWIAFTASIAWTRSAGRHWRRIVAVTTMGIAIARGVIWVAKSVASAGSVDALLNLLGLGEYVRPFEQGVDNVIGTVVAIIMTVTPNG
Ga0209086_1000050631	F050338	AGG	MPLIDGFGLPARLIVWIRAQPCGVTMQVETEDVLQELRIIYPPRPDLGSPEELWDAIRQADAEDEELGNANHWRSFVLVAWAFEPGDSVTGGVPRTIRFVCPRSTWEVAL
Ga0209086_100005064	F078664	GAGG	MATIASLWAKAGGSEAGLHELMAIARRNCPNGRAFATSTMAVQSCGCPVHAYVRSEPGLYRLAHTERNRDAYVSNEWDLWSREDDERVSAD
Ga0209086_1000050640	F063657	GGAG	MDDVITEVSVTGAVTTDGRLRFRSPLDVEAWAHGHLVARLAWEYLIDGDDNGVPRDTDEALERVEVRYIPEAVRRTMLGRQADGYYLTWAVYGLDDKRQVEFLDRAWQELLVAITRRDG