Scaffold Ga0209086_10000370

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10000370
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39010
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (44.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F004206	Metagenome / Metatranscriptome	448	Y
F007030	Metagenome / Metatranscriptome	359	Y
F010991	Metagenome / Metatranscriptome	296	Y
F051085	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000037013	F051085	AGCAG	MNYGYPGAIPYGQGGGMTQFAPQMPAMQQGTGYGAPMQQMNPSNTVADVEEQRKRLKALGLDDTMIDDALSFKQGLFEKRDEMQGKALEAIGGGIKAAGSNITGAASAAGAGLKGLASSL
Ga0209086_1000037015	F004206	N/A	MIPQITDYLLAKVPDSFKGWTREAVEDYVMFHAEQGTLKIACQDDYVVAVLVGWRQTGPEPQAWSWQPNDPNGDHWYWHQFAADCALFAMAVAAKFFHDRPESAILPAIGHRNGKLVTYKKGSMPIYKMAYKKHGNIS
Ga0209086_1000037033	F010991	N/A	MPGKKTRASLNDVAAKAGTDRNRVTWALRDDPKLPKDFKDKIRKAAEEVGYVKPPTNQHPNSKLDQDKADKIVEGIVANKSLATIAAETGLSEHTAFKYIRGVKVPVDYPENEEDWRKDVTGFLEVAIWKGTRRLAQESMAFIDDRSLPVSVAVLTDKLANIKGQPTSIHLAMTASVSHRDLMKDMKERNVTTVNDEQTPDVV
Ga0209086_1000037034	F007030	AGGA	MTATNAESPQMEDPFIYAPQPTSKVQGITQAGTRPSIHVSMYAYGGISAACMMSWVDLTATFARSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWVQLDHDIEFAAADVVRMAELAHKHQATVCIPYSCRSLPARPALRPKVEHLQALKHQVNDAECASELVPITMFASGCLAIPRKCLLETLEMLEGSAVQNPYRIDWCDDVRVERFPTLWMPFAMESMPGKLEYLSEDYAAAVRMTLAGVQHYSMKPKKQLNHWGEFPFSFAPYAG
Ga0209086_1000037044	F001259	AGGAGG	MRDCAFIYVHKSNGLVRVESLDTAKQIDGNPEWKHVATINPHVVLESILRATIKERNQIIKHLLT