Scaffold Ga0209086_10000076

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10000076
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 89626
• Total Scaffold Genes: 120
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (11.67%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F004696	Metagenome	427	Y
F005299	Metagenome / Metatranscriptome	405	Y
F006547	Metagenome / Metatranscriptome	370	Y
F013759	Metagenome / Metatranscriptome	268	Y
F014137	Metagenome / Metatranscriptome	265	Y
F015729	Metagenome / Metatranscriptome	252	Y
F017826	Metagenome / Metatranscriptome	238	Y
F019136	Metagenome / Metatranscriptome	231	Y
F031867	Metagenome	181	N
F047676	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000007623	F047676	N/A	MEIIITLIVLIIVFGIGFLVGAKQGRNQLVNQIKKDGGYYDMEYTSSAYPILDPTSSINNDTMGTIGSKPKTQTDYQMEHKAEGETPAIDFMHNWIQEKSGKKPVSQKRKPKTTKEWEDEFDIGGNS
Ga0209086_1000007624	F006547	AGGA	MKWLLVLLFPLSVSAQVYDTTYQMVYYQKSLIKKGKIELYVYSSYDIGWADESGMGITITIPNKRKKKKYKH
Ga0209086_1000007628	F014137	N/A	MLTIKNIQTIIGETYNEVFNVIGVKEEKSYYEFTLGYATVGKPNYETILLYREQTDNGMYVMEYNSKTLWLNTNEFDTIDKIIICMQTI
Ga0209086_100000763	F015729	N/A	MRRPKNFETIDAVDFEIHGHNFHTDLDLLQNKEKSSWVWVFPDGGILGDYVVLFELKWEHDCYSMKKCVLGEGNTGNYIFQDHLLSSDMMQTKDEFVSHIKWIIEQEMRVGTFQN
Ga0209086_1000007631	F031867	N/A	MKIIYMQRTIEMIVKNEIQLSADSLLQTKPTRVETHKEQNYLVYEFDNKEL
Ga0209086_1000007632	F019136	N/A	MSLTIKNYKKLESWSHNYKEFMIGEVTENQNEYCFRVGYNGIPYTIKIFRHGTSTVEYEVVLRDGADITQYGREWIKGRKLKSKELTALIFEALIVRFKPKAQGVNNPFYSNGPF
Ga0209086_1000007633	F017826	N/A	MERLKRIWNLVLVPTAFFLGALNMWIGETAVGCLFILFATNETINNDNKTK
Ga0209086_1000007634	F013759	N/A	MTIKQSNMRVELGMSLFSKRETLLGLEITTHNGITASEDALYNERIVEFSIGIIFAIFTIGFVSKGEKIDTPDMDNLQRAMKSFESEMDK
Ga0209086_1000007637	F003691	N/A	MYWVERMTLHIVKNYNMNSRMTNEFTETAFNTSRNERPIYRNFASSKMSNSVKPKSMVEFTDFMGRKHIVAVRNNTELKKQMKFFGMLKKESSTIKQIISSYPIKLGKVEKRFIAECKRELKSVLKLNNKQLDIVLA
Ga0209086_1000007641	F005299	N/A	MNKNSNAPTHNPHTFDGFDSANETWENKVGYDSANKRMVAKVYKHLYNVMNFEVKPSWLKVITEMLTEDNKLGKVSLNGYYSTIRKNLKDIEVIKYNGRKGLSKGKNWERFYSDEDWSWFITNTNSGGYGIIVK
Ga0209086_1000007646	F004696	GGA	MKLKQDEIVLMKKIKGLQDGKPKWAAAEQLDEIRSAIELLERYNNITEQDIQDEDNYLKQVFATHPAKAKA