Scaffold Ga0209086_10000043

Overview

Basic Information

• Taxon OID: 3300027770
• Scaffold ID: Ga0209086_10000043
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 110973
• Total Scaffold Genes: 179
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 124 (69.27%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000671	Metagenome / Metatranscriptome	945	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001280	Metagenome / Metatranscriptome	732	Y
F001562	Metagenome / Metatranscriptome	670	Y
F008305	Metagenome / Metatranscriptome	335	Y
F009143	Metagenome / Metatranscriptome	322	Y
F014144	Metagenome / Metatranscriptome	265	Y
F014250	Metagenome / Metatranscriptome	264	Y
F024549	Metagenome / Metatranscriptome	205	Y
F038205	Metagenome / Metatranscriptome	166	Y
F038246	Metagenome	166	Y
F047650	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209086_1000004310	F000376	AGGA	MSMYQEKAKECICCGKHVPLPIVLKDYNGIKVCPTTYYNIKEYSRIWTSIGSRPTGGIRKHFSEYVQSLVEIEKSNESV
Ga0209086_10000043101	F038205	AGGA	VGNILEILAVSCDECGGAGFVFWGDENNYDVESCDCALEMWGI
Ga0209086_10000043102	F024549	N/A	MYRLDTYYDGELEYTHKFADALQAFEAFAKCYDVGFAKEFATYNLSLPTGKMYTKNFNRIGLVSQK
Ga0209086_10000043120	F047650	AGG	MAEDVSPVYYCDSCSVARASYLIKLLDGELAFCTHHYNKSKKALDEKAYEVVELNKTEESPKLKEMAE
Ga0209086_10000043122	F000868	AGGA	MSFLENENQMVIDAEYSYIGEQLVEDWTNSNLDEGQLFADFRFAEMCESNYLKGRFNQFYDLKPEDQYYVEWDEEA
Ga0209086_10000043123	F008305	GAGG	MLGYTYKDIQAFGNSLTWAIDTAKSQGEEQQYKQLLIVWDFFEGLLAEGYIDENTYYG
Ga0209086_10000043125	F014250	GGAGG	MSYKDTLLEPRLQKLVDLGESGTDILHGELKNLMLEAETQLDYATKAEEESEEAMDSMERRYWEGQLEALTECYILTYNLTFAINERIISRG
Ga0209086_10000043135	F038246	N/A	MVTMGILDNFEIFLEKTEETEKCHYCQSKAKYSDIAKVDEKKYDVVGVCECHSFKGLSS
Ga0209086_10000043152	F001280	AGTAGG	MCIECGCESVGSETGIVPAPVIDVSRDGESGLNLSMTSTPEQTRQFINGK
Ga0209086_10000043167	F000671	N/A	MEKILCYSCNKSKNNLVIRKSALLTINLFICETCIDSKFEPRWVIILSGRQNGLDHIKEYILKKRYIGKEIAATEVIV
Ga0209086_1000004332	F014144	AGGCGG	VEKSKVVTCDICNKDVEVRWGIFANETLNRHKKAEHK
Ga0209086_1000004351	F000258	GGAGG	MTANYKLDAILEIRKFLWSKLVAAEIFDENEYFSDSINDKIVPIIPVQQVSEMDQFLSGKKHIVYDKIGTSYEENWMVCCEQVLFTIYSPDVSEINEIRNFMIDEFRRVDESARDVNRFASLSNKFKFFSIFVADISPTEPSEEMQGLMSSDVILEVKYARMVDRVGRFL
Ga0209086_1000004395	F009143	AGGTGG	MMTKWDTIQADVSDAYAYLDEEEAYNKALEEGLVIGSTEYDEDELSKSLTLDWEAYE
Ga0209086_1000004397	F001562	AGAAG	MKSQLEKEIEIKESFDQMLDDSYPDVKIGYSTFTASEILFNCDPIAYQMGLVEHEDYLAEMENE