NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10065003

Scaffold Ga0209770_10065003


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10065003 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1533
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032537Metagenome / Metatranscriptome179N
F052385Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209770_100650031F032537N/AMSSKRRQHPYGEAVSQGRCCTNGTCSRVGQPSFVNLLQDDVLPPSCKGSRRKTEGRQESGTDVGSAATAQHTHTHINTHAQGTEHHGEDNYERPTETGNFSTALNNVIKQDNMEGAALGTRMTDDGEEGEVRGKKQAAAQGEDEPEQRLCGGCQKPRARMDFVTQEWEKADAWSREAARKCKECAPAGAQQSMGGDGQSSRPKRKAAVRTQQEGQGSSSEKCEERRLEQVLCPGGCECGNALAARGSPPLVQVVTGGGGAL
Ga0209770_100650032F052385N/ATAPASEPGARARIATLEQQFGEGVHEGEFLSGCENAWPSLTSDSRSIEASVRILSTKTLNSAVQGLLQGPFVWKGVRVTAPEGGADAYQDGATFTQQLMKLQWGPVNAPEVEQDIDMQQIVKHPGGRDMRGPARLLSMVAAMPQHRPRFVPIGQDRTSILVIPQTTQYPFLAWNYDDSRFRHWKPVGKNSLKKLEKCPSKDLSAADRSKASGNARAREEDDGSGDTQRTPPMANQENSANGEGSALVTDDE
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