Scaffold Ga0209770_10049468

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10049468
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1787
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049633	Metagenome / Metatranscriptome	146	Y
F052593	Metagenome / Metatranscriptome	142	Y
F073556	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100494681	F049633	N/A	SSCKMRTELLTYLTAQLTGSIKTSQELPFQEGTNPLYLKNARRVYLDEPYTEQDTLFPTLGSLQINQRVTIVRWFLTMDAKNRNTDLDSALTILGSAKDITTITGVYTRLFDYTVTIDNDRVIYEGEYRFANLA
Ga0209770_100494682	F052593	AGGA	MAFIFPAPGVENVEATLAIRVSGDTSGLLIPAMQDITINNANDVFTWTQLDEGSKQQIPTTATNSLDLNVVLDQTSFFGTGSGADVAINKGIFGLSKTKNLVAFTLYLGDTSTGTAGKTMSGNAYITGLAPTVSADAPVWVSPVTLTVTGDYTVT
Ga0209770_100494683	F073556	N/A	MIGDIMIFDDKTDMEIYLSLEAETAKALSEIRCARKDLDQAEVRLRFVLTTIHYLKKRYEDMK