Scaffold Ga0209770_10039761

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10039761
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2024
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F006182	Metagenome	379	Y
F019834	Metagenome	227	N
F105155	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100397611	F019834	GAGG	MKELKFTITGTIFVPDDIEYEYDFENQIYSFKINDKTYSLIAGLEADEKEIIVTDENFKSHNITHVEYEDAYFED
Ga0209770_100397612	F002406	GAG	MEDLKWILAMSERLRDTLTNEYDDKTKDLIIRAFAFGLFKNNTLLEELKSSSLIESDYFEDEE
Ga0209770_100397615	F105155	N/A	LKSSVAKKLAAEIKYLEWDLITFNFYHKSYKGYNFYKRIISLNYWQYTVADDITHCTFRVYEKEAKNAKLDDERTHLHFSDK
Ga0209770_100397616	F006182	GAGG	LKINFRVTGTMEVPDDAIKHYDVAGELYALEFNDIMYMLQVCIVAEAGAGGFDILHQFEEMDNHNIKNLHYDDVNFIEE