Scaffold Ga0209770_10023899

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10023899
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2678
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009267	Metagenome / Metatranscriptome	320	N
F023103	Metagenome	211	N
F035667	Metagenome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100238992	F023103	AGAAG	MAKFKFENVKFEQIMKDYATIREVTIPDAVMLNARLLCVELARRTQPFGDKQESGTIRVKNDIGKIIKNTEQLDEYADRVGSQRIKARLKDLIKSGKFDIVETILRNIGFLNKWTGMEVISGSKMKSVHNQARNKTTGRTKSRGSKLFIASDSDHAAYIAEVQKRVGISKGGWADCATQLKKVNKGSLLSNFPPWVKKAMRSGSGKVQDMTSDIKNPRVVLTNNVPWASTVIPESEQANATAVVVVRMRNQMNQILKKRQKTLTET
Ga0209770_100238993	F035667	GAG	MEELPFAAGLQLLHADDYANGRHSAWANNNASVNVDALATIEDTLAKYGKIQVRECEI
Ga0209770_100238994	F009267	N/A	MKKNKDNDLVKDDEILRIQAMEDGPKKVNGRILRPITALTISWMQRNEVFSGDMDPVWKAAAFTFLHSEPMSTIRGVVNDRDTFINAVDSWIEKNMKHHHETTAMSDEMGKAFDLYNSASPASQPGEGSGSGN