Scaffold Ga0209770_10023017

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10023017
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2732
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F000868	Metagenome / Metatranscriptome	853	Y
F047059	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100230172	F000868	GGAGG	MSSFLENENQMVIDATYAEIGEMLVEDWVNSNLDEGQLFADYRFAEMADNNYLKGRFNLFYDLNPGDQYYLECEEEC
Ga0209770_100230175	F047059	GGA	MTKSSAFLEYMKIHKISLEQDLEDARNNIPLNEDEYFESDAFYMGAIEATEHLLSVATGIMNSSNERYNNE
Ga0209770_100230176	F000263	AGG	MNNEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLSDAIEREEESEEAMDSMDRTRCEGALDTLAELYNLTYQLSFAIGARNEARG
Ga0209770_100230178	F000441	AGGAGG	MRMSDNYINDQLSTAQKLLWGGSETENIEAHNIISKLIQDRVEQTDQI
Ga0209770_100230179	F000852	GGA	MATKREYLKSQGITVGVRGRFSGAAKVALAEAEAKGIKFTAEAPVNKAK