Scaffold Ga0209770

Basic Information
Taxon OID	3300027769 Open in IMG/M
Scaffold ID	Ga0209770_10019757 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027769 Open in IMG/M

Scaffold ID

Ga0209770_10019757 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2972
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2972

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014606	Metagenome	261	Y
F016125	Metagenome	249	N
F054669	Metagenome	139	N
F100667	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100197571	F054669	N/A	HKHKHPLIRLTQKTLGDSTRSVSFREAWLSTASQPSIVEHLFLVRTDDKETMAMSKQFLHDVDQPREAEPGMISVQIEDGMVPPHDWDRLVLESGETLIDAERIKEILKQKQP
Ga0209770_100197573	F016125	AGGCGG	MAAVRDFDPTQINSDFSAILEQAGIAFTYQGVSVTGVWAAASNAFADFEDQRRDDSKFTIFLLTSSVSAVPKVTQTLSRASITYFIERVTLDAEGAGCEISVSKAI
Ga0209770_100197574	F100667	AGG	MISIFSDTKRLEYALARLADAAKVDLGLVIKQEGAYVARTIMLITPPTGDKLAKGSQSQIPIVTGGTITKTKAGGLSANAKKQGENAILGDLFGGNKMAKEFQIGLFQRIGNSTEVPPRGGRHETMGVSLGNESGKKIRIYRKFWQGAASIGTMRDFHYANRTARGRRRQVTRSMVGRWAVQDQMWVSDQAANAYLKYTQKKVGLAKAGFAAAAMSCGVRVPSWIRRHMAKAGNAQVHFGANPFVVARTTGNQIPDLQRVVDSALKIRYKVTLSKYRAILANRAVNLGFAKVKGGMVIPKEA
Ga0209770_100197575	F014606	N/A	MSTRTNIRTATANALTGALVVPTANILRGRNNTIASVSFPSAAVYAVSEQIEVRTLGPSNRTQYRQLQLIVDYFTAESGTYLIDDLFDTGSAAVEAAVLADVTLGGQCRDLHLNSVDYVIEPDEERRWGTARHTFNCIYLTTD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209770_10019757

Overview

Ecosystem & Geography

Associated Families

Sequences