Scaffold Ga0209770_10017970

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10017970
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3131
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021979	Metagenome	216	Y
F027416	Metagenome	194	N
F054034	Metagenome	140	N
F084236	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1001797010	F021979	N/A	MLTIENINILNSKFAGTPEWQIGEIFIGEQNYIFQIHKRVGEWTIGGVKHSELTIRLHRVKVIDRYVMETGLVKQNYHGRSAYSIEFMRTINSFIFCLDAHIKRIIC
Ga0209770_100179705	F054034	N/A	MLTIRTFKKLEGLVLMDGLNVESIFEFNERYSIWLSDGTNIEIDREPHWKSSTVTYYKMYIAGGTSAMTEFIMIGTINTLDRMKKHLIYIHDKYKIPF
Ga0209770_100179707	F084236	N/A	MLEIKNQYKLVAETIVVSKNGANEHWIVDDVAEMPGVYDIIVLRKLGAFDTIFRIIRINKEKNELGMYSVQIIQEGIVIDKDQIRLSNIQTAEGMLNELKTIMEFV
Ga0209770_100179709	F027416	AGG	MLTIENIQKLEGCKVGANGMVWKILRANLFDNNSENIYSIVLTTYPDNIHRIHLYLDRELKDGQYHLTSSKSDIMRIVERQDMVDVYSFLRLIKKEIERAVC