Scaffold Ga0209770_10015870

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10015870
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3360
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014838	Metagenome / Metatranscriptome	259	Y
F020529	Metagenome / Metatranscriptome	223	Y
F022636	Metagenome / Metatranscriptome	213	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100158703	F020529	AGGAG	MFSNKNIVKYCVKYFIMMTAMAYIFNLSASLVNQKSDVANLVGSALFAGLLLVVGLVLKSDVTKLVKNLKNENNNE
Ga0209770_100158704	F022636	N/A	MSTYRRATLQDLAKIGYVPNTQKYSTHIAFAKKYYPPEATTMVMTVHSEYNDCTYDNSFQYIIVYDKDGNELPPLKKTAKECREHWTTEYLPIPNTHHGHYGGAESDDPMDDVVIPLISEVPEFYIKES
Ga0209770_100158706	F014838	GGAG	MKKSLKKIEELRNQLNEATSELRNEFRAELKKIFVANPKLDSIEMYLNNHEFNDGGATSFYIGYEDMNLIIDGEEVEREWNDKKKEYVENPLLESLIELFGDTDCIHEDMYGDEYEHLSIDRNEVLKY