NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10008436

Scaffold Ga0209770_10008436


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10008436 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4764
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010835Metagenome / Metatranscriptome298N
F013879Metagenome / Metatranscriptome267N
F023575Metagenome / Metatranscriptome209Y
F031459Metagenome / Metatranscriptome182N

Sequences

Protein IDFamilyRBSSequence
Ga0209770_1000843610F010835AGGAMNAVALRTERALVDWLSAQDWSASPLGTPTCLTSYGHGAFTDPDLEDRMPDFPRIVVRSSTAVPVHPIDRTCEVDVTATLQLSADDTPEYNVLATVAAFEDILQPLFVDDNISELNAGEYNESGGFVAYFATPTDFGINDTSERARTFSRSMTIFAAANAI
Ga0209770_1000843611F023575N/AMANSKGLALVYGAKGTITLYTPAGVALTTGAITTIESYDATHEADVEQIKNSAGEVVAQVSANERISLNVTFIPSAASFAQAKLAAGLPAVNGYATIASSDGVTIGSGASNSLDGNYVYAGGGSVKFTSSGKVMVTVTLTKYLDTTAMAGNATVYTL
Ga0209770_100084364F031459N/AMQTDTNSNSGVGISLATAAAAGAVSLLPQLTQWFQFGAAVLAFVAAAIGLYKALKK
Ga0209770_100084369F013879GGAGMTPTVTVDTSRFDAAWKEYIPKTRRSLADAVNSRTFFLMLRLYILLPPKSPQAARNKILDYFNRPIGARRIDKKTGKFLGRSRELRLVHLIAQAKNAKAGKHGLYGQDMRDAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAQVRIVAGNQALINLANQYGLPQENVSMHRGSSAYAYNAKAGFSPSSHVRLNIGLADNQIGKVEAIYAKAMQQAYNDEAKELEDHITAAFQAAFDGSESKGIVVQ
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