Scaffold Ga0209770_10007840

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10007840
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4958
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014971	Metagenome	258	Y
F044371	Metagenome	154	N
F079819	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100078403	F014971	AGGA	VTYQEAVALYPHDQVNIQVDDIVRPMTPAEYEEFIQRQVNYELSPEA
Ga0209770_100078407	F079819	AGG	MDAKTYIYEVYTSNLDSGQQVMVQIFRNPLDGRVLHSQLAFKDAAGSWGVPYQLEKK
Ga0209770_100078409	F044371	AGGA	MGNSEVNDIYPETGITEHTRAMMGMIDDLFTPNHVRRSKASHLYHLVGELEALRDDLRRMEDPRANFLQLAITELSQLII