Scaffold Ga0209770_10005733

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10005733
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5867
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F003904	Metagenome / Metatranscriptome	462	Y
F014128	Metagenome / Metatranscriptome	265	Y
F035227	Metagenome	172	Y
F090104	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000573310	F090104	GGA	MQEVESIISKLIESIKTVDSKKQIPYLVKDIDKHVQEAYSELYKYRKRNAVYKPLNDNKRGHCC
Ga0209770_100057332	F014128	N/A	MEYLQKMGIQIGFLISGLFGAILMATKNEKTDVKSVVLSLIGGMCAANFLTPVLGDMLNITNVKHQNGIAFIAGFIGLKLVEIVSENLLQKLGHKSKSKKITKRKRT
Ga0209770_100057333	F003904	AGCAG	MNNIILNIKKYLFFALLPTVILVILSISSLKDIEQGYARFRFGRDITLYLRKSTDLLTYLGAAYTTTSDKKFLDQFNNHLKEREKYFNEEIFTSKLLTEEELKEFRKGLDISNDLAKDVENAAFERMDNKAFFGDKYLDYKKKIYDNINNFRTLINDSSEKIIKDEIVKLNIYLYILCLIIILLVYLIKCDNQPIKKKTIKKKKK
Ga0209770_100057335	F001732	N/A	MTTKLPILILLVFLFTGCFSTIRPAKQIDDNQKVIAKEEKKVDTTLVEMEKNDKGKRIQTSGLSVGIQHSLNQVTNAPVQVDTARKLNERVISIVGSPHIDEIKRIKATVDLLNSALVEERRKGEELLAQRDDIINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFFISALTTIVIFVVVFVILRLLATVHPAAAAAFSIFNMLGSLIISILKALTPKAFELANFATKDKVEEFKSPLVKIVDVIQELKEKQKESPDRVYPLSELLKRFDKEMDSDEKDLIDQILKEQKWIK
Ga0209770_100057337	F035227	AGG	VSDNSSNIHRAINATTLTDKEIKKYSLVKTGDSFKKDDFILLYDDQYVKIAEGNKLLKYKVLKENTVYRRK