NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10004450

Scaffold Ga0209770_10004450


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10004450 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6758
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009267Metagenome / Metatranscriptome320N
F011222Metagenome / Metatranscriptome293N
F018136Metagenome / Metatranscriptome236N
F035667Metagenome171N
F046247Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0209770_100044502F035667GAGMEELPFAAGLQILHADDYVNGRHSAWANNKASVDVDALATIEDTLAKYGKIQVRECEI
Ga0209770_100044503F009267N/AMKKTQNTDLVKDDEILRIQAMEDGPKKVNGRILRPITALTISWMQRNEIFSGNMDPVWKAAAFTFLHSEPTSVIRGVVNDRDTFTNSVDSWIEKNMKHHHETGAMSEAMGVAFDLYNASSPSSEGGEGSGSGN
Ga0209770_100044504F011222N/AMPLAPRLKGAAFFKYMECNIKFFHTINLKAAVALATMGFKMNKPPVTRLVRTDGKESTEFWFEGVNDKGQDASQVYRQMTKEGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK
Ga0209770_100044506F018136N/AMITDSTYTLTLEKALTDTFVLALQQEMQGALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCVSHDITSLKTKLNAVRPQYAFVFGILRDGPVSLSSNERHFERSVTITVHSALFAS
Ga0209770_100044507F046247N/AMIIQPNEQGWAFDESTAWKLVYDGSTIIFFDETEKAISTQSVLFVGTKDECEAEIARLGLVDVTAQENDNGLDLHADS
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