Scaffold Ga0209770_10004280

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10004280
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6872
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004306	Metagenome / Metatranscriptome	444	Y
F009960	Metagenome	310	Y
F041197	Metagenome	160	Y
F088902	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000428017	F004306	N/A	MSLAQRELGETFRKDIKKEMSNKHIEVIRFDNAKIHIKEYIGERVLPSATYQPAIIKMIGARLLVINPDNAEEYYDCRYEDCTIKRMNG
Ga0209770_100042802	F009960	N/A	MLTIENINKINGYSLEVKGKGYYFKGWDNTTNDVANFVLVGLSASNPNIRVTLHKKGRIVFDNSQNKDCYVYGIWVDGLSFHYTKERLNTPEKFRDAIEQILNAI
Ga0209770_100042806	F041197	N/A	MSIYITNDNGSLTMKGSSKAIIKSSIKIVGTNSVLPIEIVGDFKDIPQNLHQLYMQSMLASYGSVNVYNNTEPEPKTIKEQKSEWRLNRIVDIISKAISKK
Ga0209770_100042807	F088902	N/A	MPHIPIPPTQTITPGQRMTQIINKSAFTSHSLQSALLDAQQIADIAIEQAKKVFQEYVKQEQEKKKTILTIENIDKIKGHDYSDTLKVMGVLEFENHYEFTLVGTNSNQVETILLHRRQTTDKKYIMEYKGQTLWVSKDRLSTIAGIIECMREV