NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10004235

Scaffold Ga0209770_10004235


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10004235 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6914
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (91.67%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F002052Metagenome / Metatranscriptome599Y
F010749Metagenome / Metatranscriptome299Y
F019470Metagenome / Metatranscriptome229Y
F054814Metagenome / Metatranscriptome139Y
F061653Metagenome / Metatranscriptome131Y
F099274Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209770_1000423510F010749GGAMKKFTFWRNSIVSELYVVEAATEDAAREMLHNGEVDVHSEEWMDWATDDYELEHVEIIDPLYKMVKDYNQAA
Ga0209770_1000423511F099274GAGGMATVEGQQVKVGDYVSFKCDIEQSGRIYKIEGDRLFLRAGPDGFEGGYIGGQDTTVQQASDCWID
Ga0209770_1000423517F002052GGAGMRTFKYTFTIECAGAGNADMDRVEQMIDLNMQDLVYDDEFIAALDEKESVAIQVTPFLANQMVDKPGS
Ga0209770_100042353F061653GAGMPYKYRVVTECSSKEDCELDFFGRQVLVTTNNYQTARKECIEWAAYDDILVRVINQFGSTKFQCEGAAEAFDRYPKTAEMA
Ga0209770_100042354F000354AGGAGMAKVNYDNFSGFDLNECCDHFDSEKQSNWKKISKFIVADGQEYNEVMLKEFDYDEVNEGEYEAFMRGVQYALTKMNIALDAADLPLEIAEVDLVESLGYMLVRTDDTPESFVKRVMKKPVVMVESWVD
Ga0209770_100042355F019470AGGAGMTITVAQMIQALSALPQDAELVVTESGYYCYGEFATIMLPEAYTVEGEDEDVARGTQVYRIGHSHQSY
Ga0209770_100042359F054814AGGAGMAEVKLGTLYRVTVTEYERGWGQRVDPNDTKIFTTLEEAEAYKARWEEGGTPDYFWRANIDKIG

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