Basic Information | |
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Taxon OID | 3300027769 Open in IMG/M |
Scaffold ID | Ga0209770_10004235 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6914 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (91.67%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000354 | Metagenome / Metatranscriptome | 1244 | Y |
F002052 | Metagenome / Metatranscriptome | 599 | Y |
F010749 | Metagenome / Metatranscriptome | 299 | Y |
F019470 | Metagenome / Metatranscriptome | 229 | Y |
F054814 | Metagenome / Metatranscriptome | 139 | Y |
F061653 | Metagenome / Metatranscriptome | 131 | Y |
F099274 | Metagenome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209770_1000423510 | F010749 | GGA | MKKFTFWRNSIVSELYVVEAATEDAAREMLHNGEVDVHSEEWMDWATDDYELEHVEIIDPLYKMVKDYNQAA |
Ga0209770_1000423511 | F099274 | GAGG | MATVEGQQVKVGDYVSFKCDIEQSGRIYKIEGDRLFLRAGPDGFEGGYIGGQDTTVQQASDCWID |
Ga0209770_1000423517 | F002052 | GGAG | MRTFKYTFTIECAGAGNADMDRVEQMIDLNMQDLVYDDEFIAALDEKESVAIQVTPFLANQMVDKPGS |
Ga0209770_100042353 | F061653 | GAG | MPYKYRVVTECSSKEDCELDFFGRQVLVTTNNYQTARKECIEWAAYDDILVRVINQFGSTKFQCEGAAEAFDRYPKTAEMA |
Ga0209770_100042354 | F000354 | AGGAG | MAKVNYDNFSGFDLNECCDHFDSEKQSNWKKISKFIVADGQEYNEVMLKEFDYDEVNEGEYEAFMRGVQYALTKMNIALDAADLPLEIAEVDLVESLGYMLVRTDDTPESFVKRVMKKPVVMVESWVD |
Ga0209770_100042355 | F019470 | AGGAG | MTITVAQMIQALSALPQDAELVVTESGYYCYGEFATIMLPEAYTVEGEDEDVARGTQVYRIGHSHQSY |
Ga0209770_100042359 | F054814 | AGGAG | MAEVKLGTLYRVTVTEYERGWGQRVDPNDTKIFTTLEEAEAYKARWEEGGTPDYFWRANIDKIG |
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