Scaffold Ga0209770

Basic Information
Taxon OID	3300027769 Open in IMG/M
Scaffold ID	Ga0209770_10003395 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027769 Open in IMG/M

Scaffold ID

Ga0209770_10003395 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7771
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7771

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005630	Metagenome / Metatranscriptome	394	N
F006303	Metagenome / Metatranscriptome	376	Y
F011935	Metagenome / Metatranscriptome	285	Y
F054863	Metagenome / Metatranscriptome	139	N
F056617	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100033951	F054863	N/A	GSSETFANGNSATVNVCNADGSDLDLDSKEWNEINSFVRQMSGGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHVENKAPHGTWPSAIKTLRGLIAGEYVFGPLSIDKAIEKAKSYGYSESTINKVLELV
Ga0209770_1000339512	F006303	N/A	MINWLKNKLIPPYKPNEKEQLILDIINNLCAQSDTDILMAPLSGRYYIINKRLEYWVRLWDDGITITNHKFTFSNTALQSFQAIVIKIVENAIEKSRDEFETAVFQNEVELLENIAVSIKSKN
Ga0209770_1000339515	F011935	N/A	MIKQIQNFDKVYGEQIYPADGMVYTIEKANIVKSNSDPELLEYFEVKLLDMYNNHKSADYSIAIFADNKNNQNIAAVYKKGESQSVFMDKGMSSVHFKNKEYFKTYVVTLINKAI
Ga0209770_100033952	F056617	N/A	MIHRAKYERLLKNSKGQYRYQFNWVSGGFNDIWAKNLKEFKVELKRQFGNSNLDVNYNTLHKATESGARSWDKAGDMLCW
Ga0209770_100033953	F005630	N/A	MNLYEVNGFYGTRNRGTILVYETNSGKRWYCVEGSCNINCTYDEINEGCDVERLSDIDTMSSRDGINSVDELYDFVIN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209770_10003395

Overview

Ecosystem & Geography

Associated Families

Sequences