Basic Information | |
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Taxon OID | 3300027769 Open in IMG/M |
Scaffold ID | Ga0209770_10003395 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7771 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F005630 | Metagenome / Metatranscriptome | 394 | N |
F006303 | Metagenome / Metatranscriptome | 376 | Y |
F011935 | Metagenome / Metatranscriptome | 285 | Y |
F054863 | Metagenome / Metatranscriptome | 139 | N |
F056617 | Metagenome / Metatranscriptome | 137 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209770_100033951 | F054863 | N/A | GSSETFANGNSATVNVCNADGSDLDLDSKEWNEINSFVRQMSGGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHVENKAPHGTWPSAIKTLRGLIAGEYVFGPLSIDKAIEKAKSYGYSESTINKVLELV |
Ga0209770_1000339512 | F006303 | N/A | MINWLKNKLIPPYKPNEKEQLILDIINNLCAQSDTDILMAPLSGRYYIINKRLEYWVRLWDDGITITNHKFTFSNTALQSFQAIVIKIVENAIEKSRDEFETAVFQNEVELLENIAVSIKSKN |
Ga0209770_1000339515 | F011935 | N/A | MIKQIQNFDKVYGEQIYPADGMVYTIEKANIVKSNSDPELLEYFEVKLLDMYNNHKSADYSIAIFADNKNNQNIAAVYKKGESQSVFMDKGMSSVHFKNKEYFKTYVVTLINKAI |
Ga0209770_100033952 | F056617 | N/A | MIHRAKYERLLKNSKGQYRYQFNWVSGGFNDIWAKNLKEFKVELKRQFGNSNLDVNYNTLHKATESGARSWDKAGDMLCW |
Ga0209770_100033953 | F005630 | N/A | MNLYEVNGFYGTRNRGTILVYETNSGKRWYCVEGSCNINCTYDEINEGCDVERLSDIDTMSSRDGINSVDELYDFVIN |
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