NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10003395

Scaffold Ga0209770_10003395


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10003395 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7771
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005630Metagenome / Metatranscriptome394N
F006303Metagenome / Metatranscriptome376Y
F011935Metagenome / Metatranscriptome285Y
F054863Metagenome / Metatranscriptome139N
F056617Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0209770_100033951F054863N/AGSSETFANGNSATVNVCNADGSDLDLDSKEWNEINSFVRQMSGGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHVENKAPHGTWPSAIKTLRGLIAGEYVFGPLSIDKAIEKAKSYGYSESTINKVLELV
Ga0209770_1000339512F006303N/AMINWLKNKLIPPYKPNEKEQLILDIINNLCAQSDTDILMAPLSGRYYIINKRLEYWVRLWDDGITITNHKFTFSNTALQSFQAIVIKIVENAIEKSRDEFETAVFQNEVELLENIAVSIKSKN
Ga0209770_1000339515F011935N/AMIKQIQNFDKVYGEQIYPADGMVYTIEKANIVKSNSDPELLEYFEVKLLDMYNNHKSADYSIAIFADNKNNQNIAAVYKKGESQSVFMDKGMSSVHFKNKEYFKTYVVTLINKAI
Ga0209770_100033952F056617N/AMIHRAKYERLLKNSKGQYRYQFNWVSGGFNDIWAKNLKEFKVELKRQFGNSNLDVNYNTLHKATESGARSWDKAGDMLCW
Ga0209770_100033953F005630N/AMNLYEVNGFYGTRNRGTILVYETNSGKRWYCVEGSCNINCTYDEINEGCDVERLSDIDTMSSRDGINSVDELYDFVIN

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