Scaffold Ga0209770_10002958

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10002958
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8414
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Sphingobacterium → unclassified Sphingobacterium → Sphingobacterium sp. 1.A.4 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F073100	Metagenome	120	N
F095282	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100029581	F095282	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQSWPLNHTTEQKAFRFGRGFHDPCTPFRQITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNAR
Ga0209770_100029585	F021128	N/A	MKGKMKLKNRNLAPVGGWYYKYEIKRDKLTFPAVVYGSTWSSLISNIQKDCRSNGIDIPENLEQLVEDQICQRQPSDRCWYADGLGDRIAQAIHTVAAVTDKVLGTKLEHKARGCSSCNRRRNALNSLS
Ga0209770_100029586	F023326	GAG	MDELGVELYCYAISKGEYGKEYCNKHNINLSDFKLLTPYEHFLNAVKLQWPTEVSIVNRGYTNTQLLRTLEELCNNDDICLAGAASMGKSFPVGLWVYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKSAAVQFGKLIDYRHMIVWGGGSNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRIRLALDELPEMELGAITARVNLSANNDVVFIGIGNPSAGDNPHTRWAMPKGQSNFDTVSPEMDKWDTETGVCLFYNGMRSPNFAAPEHEPSPFPFLMDRKKQQVMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTNEEPLWDSEGFHKIAGFDTAFTVGGDRCVLTIAKLGYIRGTRNRVMWLEKQKIIQLSAREAAEFEVGLAKEVVELCRASGVQPTKFGMDVSGDGGRVAQAIIREWLKHDSSGHSIALISSMGKPTERMAAEVDKRPCKDVYDRLVSEYWYSAYHGFKSRVIYGVGPTSELARELCIRRYTIKSKKISVETKDDFKGRTGYSPDLADSFLYCLEMSRRFGLVFIGNDKAVPTNRFWAREEKPVESFSDDDSYSSDENGDW
Ga0209770_100029589	F073100	N/A	MDNTNENNAVDKDAERMLAAIRQTVLITNMSLAAALNNGFIAQYESDQGICNMALKPNNTAVVATTAATGLTIYQSNFFIKDDAMGEQRHIYKCENEDDADTLWASINDKMFEWSRGEIKSVDI