Scaffold Ga0209770

Basic Information
Taxon OID	3300027769 Open in IMG/M
Scaffold ID	Ga0209770_10002510 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027769 Open in IMG/M

Scaffold ID

Ga0209770_10002510 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9141
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (8.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

9141

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (8.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023345	Metagenome / Metatranscriptome	210	N
F041040	Metagenome / Metatranscriptome	160	N
F050320	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000251010	F041040	N/A	MIYNNMILKNKICILFLHYSSDDVTLRNYELIKKYNPNNILYTIGFENHNLIKGSHIVSRKESYPKNDILNETSKREYWSEADLLIYDFYLNYPNLPTYLVIEWDTYCNCSLESFYGNALTLSNFSHMTYPKETLNNWYWYTQLSESQKLIPNIGGIGPTSGLFFTRYTLSSMINLMINNPRQYDNMFSELRLGTLLQQSGYTLNKPFLNSESYINWNIDNITFDPSKPGYYHPIKTIV
Ga0209770_1000251011	F023345	N/A	MSNTINENDLGDRMYTGQSYIQGGLGGASSLGTYSSPDVSQNIGAFKANSTLAGFKYAPTIAGSASDISTPPPEDYDNKSTYSPSQYDKDVDAIKYKVTPDEVLAGLQYELKKMVFKRKDLAKELVVRNLKEDNKYYSKLHMLNIDDDDKLPVKPSFMSPESKAEPYNLMATPQQEAVDYRTPQEKEIGKIIREMAQKKYEKRFPKA
Ga0209770_100025109	F050320	N/A	MNKKIILFSHHKVDELTINRFNLVKRLNPTWNVVSIGFNGYDLLPNSLFVNREIYPKNKELVEIDNLHTEDWSNPDFFLYSGYSEFPNYDEYFLYEYDTISNVGIEEFFDTNVDFFGNGIRSPADEEWWWVKQYRKLNPNNHKFNNLHSYGQSTCIYFKNHILKKCTEEILKNKSLYNNMLSEIRGGTLVSQFTTLKTGRNDIEQYISWTPDDIKFNVKIPHFYHPVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209770_10002510

Overview

Ecosystem & Geography

Associated Families

Sequences