Scaffold Ga0209770_10002136

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10002136
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9923
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (78.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F001460	Metagenome / Metatranscriptome	690	Y
F023344	Metagenome / Metatranscriptome	210	Y
F038246	Metagenome	166	Y
F047059	Metagenome / Metatranscriptome	150	Y
F060917	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100021361	F023344	AGGCGG	MEAFTDTVGEHILGAIQVDIEQALFEDWNNANLDEGEAYAEYRFMQFAPDNLKQSYNEYYGYIEGDEFCL
Ga0209770_1000213617	F038246	AGGA	MGILDNLEAALEAEEAEKCHYCQAIAVYNDLAEVDKNYQVVGVCACHSFKGLSS
Ga0209770_1000213623	F060917	AGGA	MIDWLVNRIFRFTSLRQAIFEEVHMYDHISDIFTNSDLTDIASCSWMEGDTWYGWEYDKKKNRYYFNDIGNKSLVGLWEDQWLDKADTN
Ga0209770_100021363	F001460	GGA	MLGYTKTDIDNMINSVHDIKLFYIRTPSDLIDKEPLIKNLEMTISFLQGLWAEGYFDGYE
Ga0209770_100021364	F047059	AGAAGG	MATKTSTFLEYMKIHLISLEQDLEDARNNIPLNEDEYFESDAYYMGAIDTMRHILSVASDIMINNERNINESGRHWTPATFTTFG
Ga0209770_100021365	F000263	AGGA	MNQEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQELADAIEREEESEEAMDSMVRTECEGALDTLVALYELTYQLSFAIGARNEA