Scaffold Ga0209770_10002113

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10002113
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9962
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004154	Metagenome / Metatranscriptome	450	Y
F005349	Metagenome / Metatranscriptome	403	Y
F013636	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100021133	F004154	N/A	MWNKVKYYVLRYWVAVSFLLLAFYFYEPTQSITHCSPNTLSTDTPKTFFGLGEMTLMWILMAIAHSANACYCDIKSLINKK
Ga0209770_100021134	F005349	N/A	MAYYIHKQLIPIDTNLGDPNWSKRQIWVLKLNPIDTIDSFETIEEAQNKVGLLMSEDPSGRIYKVVQKNEDGTFSDI
Ga0209770_100021138	F013636	N/A	MVNPNVKWQRYLIGYNPVIVSYLSTYGDEILRQTYERLISAYKNKKSQIILFRFKESDIVSIIRNDEYIYALECLLVLCSNIEKYELCRDIHNQLKIIKLKKARGKLPKAKVTIT