Scaffold Ga0209770_10001876

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10001876
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10694
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034078	Metagenome	175	Y
F035650	Metagenome / Metatranscriptome	171	Y
F058735	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000187612	F058735	N/A	MDKTKEFRKQLEKLPREDLLEIIKAQDPEYLKQVNRIEWVFENKLNHINWMDGTPVTERKFTNRELALLVDEPFEVDNNLLNMRNFCRPTKTNTYS
Ga0209770_100018765	F034078	AGGAG	VSDWKNFINVNGNFELPNFLYKTINDLMKQALDMGTLLSDDPYKLRAYKEQTKKLFKNKWYDLAQALEFFEIIEPCSCASARLEANGGKDIYCDICKGARYIISSALTPDEMREVSMFVNAAQNVEVAEKLQKSLMKVLSEHS
Ga0209770_100018766	F035650	GGA	MENNIERFEDKNSFMDKFESLRPDLFFPDEWTDEQREKAVSLVRPQKTRTSMFSSIPMRCEGSKCIFAETCPLHQQNLAPKGKACPIEMGMVSQFTGEYMEQLDVSPDNLVEVSMVRDLVDQEVQYLRKTKLLAKEHFIQENIIGIDKDGEPILKKELHLAVELEDRLHKRRKDLRNQLLATREARAKTGQTQLDTAQAISDIIHKVQMVEIENNKLIRKKLGTYEVDDYIEAQTQSDEKNDPL