Scaffold Ga0209770_10001154

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10001154
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13792
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011668	Metagenome / Metatranscriptome	288	Y
F034928	Metagenome / Metatranscriptome	173	Y
F048162	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000115421	F034928	AGG	MTNQMQWRGYPLRCWPNHQDDCYRWDWEIQIDGTWVEVVTQATRWIEEEAEETLQRYLTNRVK
Ga0209770_100011545	F011668	N/A	MNAKSIALWMIVLSFAFLGMALLTSCAGFNNPAVCIKTDYGTFCYTPEFSKTLHDK
Ga0209770_100011547	F048162	N/A	LKKKKQPTVESERTEALAEAKRILSEHYDCGLTIVSWEQGGETMHGEFVFGNKYAVEGLASDSFSILFPDTEEEEEDEEA