Scaffold Ga0209770_10001133

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10001133
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13924
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (13.16%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002303	Metagenome / Metatranscriptome	573	Y
F003542	Metagenome / Metatranscriptome	480	Y
F005630	Metagenome / Metatranscriptome	394	N
F010836	Metagenome / Metatranscriptome	298	Y
F027843	Metagenome	193	Y
F028510	Metagenome	191	Y
F029655	Metagenome	187	Y
F039625	Metagenome	163	Y
F056617	Metagenome / Metatranscriptome	137	N
F070108	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_100011331	F056617	N/A	MIHRAKYERLLKNSKGQYRYQFNWVSGGFNDIWAKNLKEFKVELKRQFGNSNLDVNYNTLHKATESGAR
Ga0209770_1000113311	F028510	N/A	MKNTLKQRTYECKCGVQTKEYVWDNDLDKTKVECSECSKQLTNKNLVSTNTNWAASIRTPTKNR
Ga0209770_1000113315	F010836	N/A	MATSNFHNVNASHIFACSLENEWDYEDLVDNLKSELSNDSDYVDYGKTDNNELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYEGCNLDWNVDYLLNGDVSYDSPDFYIDDIAYCGNLTKSAATKYAKLAEKKAEKLKNEIVEKLEAIYNDYSMKLGVTAQFSNGETIYHKVA
Ga0209770_1000113318	F027843	GGA	MQIEMMNANGSVWVVKRKFKADSWFVQGLFSNKFTAQEACEWYCVEKLLRDANNTHYLVNEVSEAQIIEDEVQS
Ga0209770_1000113321	F070108	N/A	MVFSLEEQMDIELILAEASAYGLSAEVEEYAQRYLSEGCTPVEAYQHAYYEWIK
Ga0209770_1000113324	F002303	N/A	MDIREQNRERAIEFAKEWGYENVSNHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLAMSRADTDCRNNIFLLTMCKANCYV
Ga0209770_1000113326	F039625	N/A	MNINHIEITQIKSIIAKASIEELRMLNETIINTIKFKRTTEASLKKMELSIGMKVRVNHPKLYGRELVVNKINRTKATLGVIGGFGSYNVPISLIEY
Ga0209770_1000113329	F029655	GAG	MNKLVFKINEKACVAFLKKYPLVCNLMENSNGKDLLSAYKKFLKLKDINEPKLGGRGESIGSVSFGTKTFYKYDWDTCSGWAEVFEYYKSKK
Ga0209770_100011333	F005630	N/A	MANLYEVEGFYGSRNRGTILVYETYSGKRWYCVEGSCNINCTYDEINEGCDVETISDIDTMSSRDGIYSARELCDFVIN
Ga0209770_100011335	F003542	N/A	MSKVNFDYDLFSEKIGYDSQNKMYLIRVYDLLVFEMNTNPAPTWTGIMKKMLGDNPNRCNTSSYYSSVRRCLKEIDVCKFDSVKRCMVKGSNWNRFVSAEDWSWFIMRTGSCEYSTIIK