Scaffold Ga0209770_10001118

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10001118
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14009
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002433	Metagenome / Metatranscriptome	559	Y
F005503	Metagenome / Metatranscriptome	398	Y
F007466	Metagenome	350	Y
F007799	Metagenome	344	N
F011152	Metagenome	294	Y
F028163	Metagenome	192	N
F029109	Metagenome	189	Y
F030695	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000111812	F007466	AGG	MTQWAPVWRVKIDGTDVTDSVLANLTITSGRTNIYEQAQAGYCSVNLIVFGQAAIPYEINNTISIEVQDTSAVYVPIFGGSVVDISVSVSQVGSTAYTQEVTITALGALARLQKALTDGVLTQDFDGNQIETILREVLLTQWQQVPAALQWTTYDPTTTWATVTNNGLGEIDTPGNYELAQRSSNRTIIYDLVAALATSGLGYLYESASGLISYADSTHRTTYLAANGYTDLTANHALGQGITIKTRAGDVRNDITISYGISSGSEISDTDPESIAIYGDLSQIITTTIKHQADAEDQAAFYLALRAYPQPIFDSITYALTNPELDNADRDDLINIFMGQPIALNDLPPNMSSGTFQGFVEGWTFRASYNQLDITLLMSPLAYSLQAMRWNDVPINEQWNTVSPTLEWQYATIVS
Ga0209770_1000111814	F029109	GGAG	MAFKATKGQGTFRIEVEPYELKNLISTLNLLDKESQSRVRDAAQPLSKRLAGQIMMFGHGSPTPQTKLVLQSIATPRDRLIRVDIGGAKKVGRAYGGRPSKSGKGAKVGRTQAPAGALLWGSEYGSRPGLDRAGRKYTNRFKVPYNREGYWLNKSVDFYTPVVAQEYISIVKGIINDLGL
Ga0209770_1000111818	F030695	AGGA	MPAIITVASLRQVLGVSVSLYSNDYLESIIDSAEQVILPLLTANQNSVAAVYLQNNVAYYITQKPNTFVAGQSVVITGCVPSTFNGTKTVTSNYYDPFPYLPFAYPAPYFYFTCAVTNADIDFRPVIPGGVAYLSGADAATLYANTDAVEQAVTIVSVEIFQSVVAPGGQIEGVDFAPSPFRMGRSLQNRVIGLLGNYVDVSTMAM
Ga0209770_100011183	F011152	N/A	MTVTPADEWAIHKRASDVVFAQEAILGVIQYYNKLNNHERVVEYAESLAAELCVARYFGLDYDINDNKGKSRSDVGKGIEVKWTSYQGGNLIISPNDRESDVAVLVVGKSPVYYIVGWLPVSFAKRKRFKNPRQDSWWVDQGNLNPIENLARSEYATAAI
Ga0209770_100011184	F028163	N/A	MSRVTEMIDVDTMIGRTLIDGKIVAEFKCETCDHCQRIEILDRAGYQRDVSGEPILWFCGKCRK
Ga0209770_100011185	F007799	AGGCGG	VSFLDNYEDVAARIQRFWATHKDGKIHTSIMDINLEKGYVLVECRVYRHYDDHEPAGIDYAFGNVNTYNVQMKKWFVEDTVTSAIGRCVGLVLGSDKRPTVQNMQQVERIDSKIVQDSAVAYDYWTTKHGDVPSFKTREEAEESGIPTLGVAIDTIKETLGGVQLAAAPLCAHGHMIWKEGTSAKTGKGWGGYMCVERVKAKQCAPAWYMLGSDGQWRPQV
Ga0209770_100011186	F005503	GGAG	MTSGEIGLFLFMCLACILWAIVSYTMGYKEGHKEGYQRGRAVGRHASAQAVSK
Ga0209770_100011187	F002433	N/A	VSVGEWTAVGGLVLALLTAIYSSMRFMVKSIMREFQPNGGNSLKDQVSRIEARLDQLLLEIAIKK