Scaffold Ga0209770_10001027

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10001027
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14638
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F025487	Metagenome	201	Y
F055679	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000102722	F001165	N/A	MTNPNTPRIPDSIDIQRLQAMQLVAKMKESAEKHGIGFIGGFISPDGQKFVMTNMDDDDAMALMPEDLK
Ga0209770_1000102733	F025487	GGGGG	MTHDSIDLDLVDKTIALIPEHAWTQVRQAIVTALVDNMPGSVIQHLTGSYDDFDRAEEILYDYYELPALSHELIADAFKIMGEVNCLELLHSLNLTEDELQTMQQ
Ga0209770_100010275	F055679	GGAG	VIDLTTGWVPHPGVPGGFHLVYIDSLVGEISIVTGPKGSGLMAANDPGSETTYEAWFPGMCDPIGYLTLAELQGIIKFMRQREQEHLAWQDED